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Lj3g3v0260490.1

Overview

Field Value
Gene ID Lj3g3v0260490
Transcript ID Lj3g3v0260490.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Glycine max] gi|356557289|ref|XP_003546950.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12553:SF49
1 144 144 4.70E-214 –
PANTHER
PTHR12553
1 144 144 4.70E-214 –
PANTHER
PTHR12553:SF49
162 532 371 4.70E-214 –
PANTHER
PTHR12553
162 532 371 4.70E-214 –
Hamap
MF_01818
171 498 328 22.129
IPR013471
Gene3D
G3DSA:3.60.15.10
172 300 129 6.70E-83
IPR001279
SUPERFAMILY
SSF56281
172 277 106 1.24E-45
IPR001279
SUPERFAMILY
SSF56281
338 497 160 1.24E-45
IPR001279
Gene3D
G3DSA:3.60.15.10
361 513 153 6.70E-83
IPR001279
Pfam
PF12706
389 469 81 2.40E-06
IPR001279

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016891
Molecular function Endoribonuclease activity, producing 5'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters.
Subterm of
GO:0042779
Biological process TRNA 3'-trailer cleavage Cleavage of the 3'-end of the pre-tRNA as part of the process of generating the mature 3'-end of the tRNA; may involve endonucleolytic or exonucleolytic cleavage, or both.
Subterm of
Part of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj3g3v0260490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0260490.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.