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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0270530 |
| Transcript ID | Lj3g3v0270530.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Aquaporin [Medicago truncatula] gi|357454843|ref|XP_003597702.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| PANTHER | 4 | 246 | 243 | 1.50E-178 | ||
| PANTHER | 4 | 246 | 243 | 1.50E-178 | – | |
| SUPERFAMILY | 13 | 241 | 229 | 3.92E-66 | ||
| Pfam | 16 | 230 | 215 | 5.80E-74 | ||
| Gene3D | 17 | 239 | 223 | 1.40E-70 | ||
| CDD | 19 | 233 | 215 | 2.47E-61 | ||
| PRINTS | 19 | 38 | 20 | 2.50E-56 | ||
| TMHMM | 20 | 42 | 23 | – | – | |
| Phobius | 20 | 42 | 23 | – | – | |
| TIGRFAM | 23 | 230 | 208 | 6.00E-52 | ||
| Phobius | 43 | 53 | 11 | – | – | |
| Phobius | 54 | 73 | 20 | – | – | |
| TMHMM | 54 | 75 | 22 | – | – | |
| PRINTS | 63 | 87 | 25 | 2.50E-56 | ||
| Phobius | 74 | 84 | 11 | – | – | |
| ProSitePatterns | 81 | 89 | 9 | – | ||
| Phobius | 85 | 106 | 22 | – | – | |
| TMHMM | 85 | 107 | 23 | – | – | |
| PRINTS | 100 | 119 | 20 | 2.50E-56 | ||
| Phobius | 107 | 112 | 6 | – | – | |
| TMHMM | 109 | 131 | 23 | – | – | |
| Phobius | 113 | 134 | 22 | – | – | |
| Phobius | 135 | 139 | 5 | – | – | |
| Phobius | 140 | 159 | 20 | – | – | |
| TMHMM | 141 | 160 | 20 | – | – | |
| PRINTS | 143 | 161 | 19 | 2.50E-56 | ||
| Phobius | 160 | 170 | 11 | – | – | |
| TMHMM | 167 | 189 | 23 | – | – | |
| Phobius | 171 | 193 | 23 | – | – | |
| PRINTS | 176 | 198 | 23 | 2.50E-56 | ||
| Phobius | 194 | 212 | 19 | – | – | |
| PRINTS | 213 | 233 | 21 | 2.50E-56 | ||
| Phobius | 213 | 235 | 23 | – | – | |
| TMHMM | 213 | 235 | 23 | – | – | |
| Phobius | 236 | 246 | 11 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v0270530.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0270530.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.