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Lj3g3v0275840.1

Overview

Field Value
Gene ID Lj3g3v0275840
Transcript ID Lj3g3v0275840.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356574629|ref|XP_003555448.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
20 52 33 – –
PANTHER
PTHR10593
28 200 173 2.40E-201 –
PANTHER
PTHR10593:SF50
28 200 173 2.40E-201 –
Gene3D
G3DSA:3.30.160.60
54 77 24 6.80E-06
IPR013087
SMART
SM00355
55 77 23 0.0052
IPR015880
ProSiteProfiles
PS50157
55 77 23 10.99
IPR007087
Pfam
PF12171
55 77 23 2.60E-05
IPR022755
SUPERFAMILY
SSF57667
55 77 23 1.34E-07 –
ProSitePatterns
PS00028
57 77 21 –
IPR007087
SMART
SM00355
96 126 31 130
IPR015880
Gene3D
G3DSA:3.30.160.60
119 152 34 4.20E-05
IPR013087
SUPERFAMILY
SSF57667
126 151 26 1.34E-07 –
SMART
SM00355
131 151 21 140
IPR015880
PANTHER
PTHR10593:SF50
233 311 79 2.40E-201 –
PANTHER
PTHR10593
233 311 79 2.40E-201 –
PANTHER
PTHR10593
332 540 209 2.40E-201 –
PANTHER
PTHR10593:SF50
332 540 209 2.40E-201 –
MobiDBLite
mobidb-lite
399 454 56 – –
MobiDBLite
mobidb-lite
522 556 35 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj3g3v0275840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0275840.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.