Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v0290440.2

Overview

Field Value
Gene ID Lj3g3v0290440
Transcript ID Lj3g3v0290440.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description 23S rRNA (uracil-5-)-methyltransferase rumA [Medicago truncatula] gi|357454725|ref|XP_003597643.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11061
1 26 26 1.10E-129 –
PANTHER
PTHR11061:SF30
1 26 26 1.10E-129 –
ProSiteProfiles
PS51687
1 313 313 46.078
IPR010280
SUPERFAMILY
SSF53335
3 310 308 4.82E-42
IPR029063
PANTHER
PTHR11061:SF30
42 313 272 1.10E-129 –
PANTHER
PTHR11061
42 313 272 1.10E-129 –
Gene3D
G3DSA:3.40.50.150
155 311 157 3.50E-43
IPR029063
Pfam
PF13847
218 281 64 2.30E-11
IPR025714
CDD
cd02440
219 310 92 8.39E-13 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0008173
Molecular function RNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj3g3v0290440.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0290440.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.