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PS51687

Source: ProSiteProfiles

Description

SAM-dependent methyltransferase RNA m(5)U-type domain profile.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0008173
Molecular function RNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
Subterm of

Associated Lotus transcripts 12

Transcript Name Description Predicted domains Domain count
Lj0g3v0055679.1
– S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao] gi|508710875|gb|EOY02772.1|
Domains
10
Lj1g3v3834390.1
– S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao] gi|508710875|gb|EOY02772.1|
Domains
16
Lj3g3v0290440.1
– 23S rRNA (uracil-5-)-methyltransferase rumA [Medicago truncatula] gi|357454725|ref|XP_003597643.1|
Domains
7
Lj3g3v0290440.2
– 23S rRNA (uracil-5-)-methyltransferase rumA [Medicago truncatula] gi|357454725|ref|XP_003597643.1|
Domains
10
Lj3g3v2718810.1
– 23S rRNA (uracil-5-)-methyltransferase rumA [Medicago truncatula] gi|357454725|ref|XP_003597643.1|
Domains
13
Lj3g3v3085960.1
– PREDICTED: zinc finger CCCH domain-containing protein 24-like [Glycine max] gi|356544604|ref|XP_003540739.1|
Domains
19
Lj3g3v3085960.2
– PREDICTED: zinc finger CCCH domain-containing protein 24-like [Glycine max] gi|356541487|ref|XP_003539207.1|
Domains
24
Lj3g3v3085960.3
– PREDICTED: zinc finger CCCH domain-containing protein 24-like [Glycine max] gi|356544604|ref|XP_003540739.1|
Domains
24
LotjaGi1g1v0623300.1
– 23S rRNA (Uracil-5-)-methyltransferase; TAIR: AT3G27180.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q6M9M7|Y1998_PARUW Uncharacterized RNA methyltransferase pc1998; TrEMBL-Plants: tr|K7MFD5|K7MFD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0623300
Domains
16
LotjaGi2g1v0360600.1
– 23S rRNA (Uracil-5-)-methyltransferase; TAIR: AT2G28450.1 zinc finger (CCCH-type) family protein; Swiss-Prot: sp|Q8L7S3|C3H24_ARATH Zinc finger CCCH domain-containing protein 24; TrEMBL-Plants: tr|K7LTE4|K7LTE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0360600
Domains
23
LotjaGi3g1v0022800.1
– 23S rRNA (Uracil-5-)-methyltransferase; TAIR: AT3G21300.1 RNA methyltransferase family protein; Swiss-Prot: sp|Q8KGF9|Y009_CHLTE Uncharacterized RNA methyltransferase CT0009; TrEMBL-Plants: tr|G7IHW5|G7IHW5_MEDTR 23S rRNA (Uracil-5)-methyltransferase RumA; Found in the gene: LotjaGi3g1v0022800
Domains
18
LotjaGi3g1v0022800.2
– 23S rRNA (Uracil-5-)-methyltransferase; TAIR: AT3G21300.1 RNA methyltransferase family protein; Swiss-Prot: sp|Q8KGF9|Y009_CHLTE Uncharacterized RNA methyltransferase CT0009; TrEMBL-Plants: tr|G7IHW5|G7IHW5_MEDTR 23S rRNA (Uracil-5)-methyltransferase RumA; Found in the gene: LotjaGi3g1v0022800
Domains
18

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd02440 CDD 1 8.33