Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v0323180.1

Overview

Field Value
Gene ID Lj3g3v0323180
Transcript ID Lj3g3v0323180.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description F-box/LRR-repeat protein [Medicago truncatula] gi|357513655|ref|XP_003627116.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 50 50 – –
PANTHER
PTHR32212
30 202 173 6.00E-87 –
PANTHER
PTHR32212:SF65
30 202 173 6.00E-87 –
Gene3D
G3DSA:1.20.1280.50
48 90 43 7.10E-07 –
SUPERFAMILY
SSF81383
51 122 72 2.88E-12
IPR001810
ProSiteProfiles
PS50181
52 105 54 9.18
IPR001810
Pfam
PF00646
54 92 39 2.40E-06
IPR001810
SMART
SM00256
58 97 40 4.10E-04
IPR001810
SUPERFAMILY
SSF52058
174 316 143 1.12E-06
IPR032675
Gene3D
G3DSA:3.80.10.10
176 304 129 1.50E-08
IPR032675
PANTHER
PTHR32212
236 427 192 6.00E-87 –
PANTHER
PTHR32212:SF65
236 427 192 6.00E-87 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj3g3v0323180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0323180.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.