Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v0323220.1

Overview

Field Value
Gene ID Lj3g3v0323220
Transcript ID Lj3g3v0323220.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: beta-fructofuranosidase, cell wall isozyme-like isoform 2 [Glycine max] gi|356556771|ref|XP_003546696.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd08996
1 302 302 8.04E-82 –
PANTHER
PTHR31953:SF16
1 501 501 0 –
PANTHER
PTHR31953
1 501 501 0 –
SMART
SM00640
1 455 455 5.50E-209
IPR001362
Pfam
PF00251
1 299 299 3.70E-95
IPR013148
SUPERFAMILY
SSF75005
1 300 300 3.85E-87
IPR023296
Gene3D
G3DSA:2.115.10.20
2 140 139 1.00E-07
IPR023296
Gene3D
G3DSA:2.60.120.560
270 309 40 1.90E-64
IPR013189
SUPERFAMILY
SSF49899
299 343 45 1.50E-34
IPR013320
Gene3D
G3DSA:2.60.120.560
348 495 148 1.90E-64
IPR013189
SUPERFAMILY
SSF49899
370 497 128 1.50E-34
IPR013320
Pfam
PF08244
373 455 83 2.10E-18
IPR013189
Coils
Coil
497 501 5 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004553
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v0323220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0323220.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.