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Lj3g3v0339030.1

Overview

Field	Value
Gene ID	Lj3g3v0339030
Transcript ID	Lj3g3v0339030.1
Related isoforms 2	Lj3g3v0339030.2 Lj3g3v0339030.3
Lotus japonicus genome version	MG20 v3.0
Description	Pentatricopeptide repeat-containing protein [Medicago truncatula] gi\|357454525\|ref\|XP_003597543.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR24015 View details on PTHR24015 Search for proteins/transripts with this domain View external data on PTHR24015	42	302	261	6.90E-62	–
PANTHER	PTHR24015:SF525 View details on PTHR24015:SF525 Search for proteins/transripts with this domain View external data on PTHR24015:SF525	42	302	261	6.90E-62	–
ProSiteProfiles	PS51375 View details on PS51375 Search for proteins/transripts with this domain View external data on PS51375	212	246	35	9.032	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01535 View details on PF01535 Search for proteins/transripts with this domain View external data on PF01535	216	244	29	0.0091	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR00756 View details on TIGR00756 Search for proteins/transripts with this domain View external data on TIGR00756	216	248	33	1.60E-04	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF13041 View details on PF13041 Search for proteins/transripts with this domain View external data on PF13041	246	293	48	5.40E-12	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51375 View details on PS51375 Search for proteins/transripts with this domain View external data on PS51375	247	281	35	11.531	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR00756 View details on TIGR00756 Search for proteins/transripts with this domain View external data on TIGR00756	250	282	33	2.70E-08	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51375 View details on PS51375 Search for proteins/transripts with this domain View external data on PS51375	282	316	35	5.875	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj3g3v0339030.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0339030.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.