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Lj3g3v0429670.1

Overview

Field Value
Gene ID Lj3g3v0429670
Transcript ID Lj3g3v0429670.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1-like isoform 1 [Glycine max] gi|356517132|ref|XP_003527244.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10640
1 439 439 5.30E-232
IPR017714
Hamap
MF_03118
16 520 505 67.517
IPR027505
Hamap
MF_03116
16 240 225 39.935
IPR027514
SUPERFAMILY
SSF53639
25 245 221 3.73E-45
IPR001303
Gene3D
G3DSA:3.40.225.10
26 245 220 3.10E-59
IPR001303
SMART
SM01007
29 232 204 5.70E-40
IPR001303
Pfam
PF00596
30 231 202 7.00E-41
IPR001303
TIGRFAM
TIGR03328
31 237 207 1.40E-65
IPR017714
Hamap
MF_01681
277 520 244 35.308
IPR023943
Gene3D
G3DSA:3.40.50.1000
278 499 222 1.40E-15
IPR023214
Hamap
MF_03117
279 520 242 56.929
IPR027511
SFLD
SFLDF00044
279 512 234 0 –
TIGRFAM
TIGR01691
279 516 238 3.60E-69
IPR023943
SUPERFAMILY
SSF56784
279 520 242 3.88E-57
IPR023214
Pfam
PF00702
279 491 213 5.10E-08 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0019509
Biological process L-methionine salvage from methylthioadenosine The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine.
Subterm of
GO:0043874
Molecular function Acireductone synthase activity Catalysis of the reactions: 5-(methylthio)-2,3-dioxopentyl phosphate + H2O = 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + phosphate; (1a) 5-(methylthio)-2,3-dioxopentyl phosphate = 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate; (1b) 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate + H2O = 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + phosphate.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 56

Expression data

Expression pattern

Expression pattern of Lj3g3v0429670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0429670.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.