Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v0461640.1

Overview

Field Value
Gene ID Lj3g3v0461640
Transcript ID Lj3g3v0461640.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase-like [Glycine max] gi|356568270|ref|XP_003552336.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31637
5 556 552 0 –
PANTHER
PTHR31637:SF3
5 556 552 0 –
PIRSF
PIRSF001492
12 554 543 8.90E-167
IPR005995
TIGRFAM
TIGR01307
17 547 531 6.80E-107
IPR005995
Pfam
PF01676
17 542 526 2.10E-102
IPR006124
Gene3D
G3DSA:3.40.720.10
17 93 77 2.50E-57
IPR017849
SUPERFAMILY
SSF53649
18 93 76 7.85E-48
IPR017850
SUPERFAMILY
SSF64158
93 328 236 2.22E-58
IPR011258
Gene3D
G3DSA:3.40.1450.10
94 328 235 2.40E-67
IPR011258
Pfam
PF06415
99 319 221 4.50E-56
IPR011258
Gene3D
G3DSA:3.40.720.10
337 547 211 2.50E-57
IPR017849
SUPERFAMILY
SSF53649
337 545 209 7.85E-48
IPR017850

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004619
Molecular function Phosphoglycerate mutase activity Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006007
Biological process Glucose catabolic process The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose.
Subterm of
GO:0030145
Molecular function Manganese ion binding Interacting selectively and non-covalently with manganese (Mn) ions.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj3g3v0461640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0461640.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.