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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0462220 |
| Transcript ID | Lj3g3v0462220.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | RecName: Full=Repetitive proline-rich cell wall protein 2; Flags: Precursorgi|410107|gb|AAA62447.1| cell wall proline-rich protein [Medicago truncatula] gi|3914458|sp|Q40375.1|PRP2_MEDTR |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 17 | 17 | – | – | |
| Phobius | 1 | 34 | 34 | – | – | |
| SignalP | 1 | 36 | 36 | – | – | |
| SignalP | 1 | 34 | 34 | – | – | |
| Phobius | 18 | 29 | 12 | – | – | |
| Phobius | 30 | 34 | 5 | – | – | |
| Phobius | 35 | 415 | 381 | – | – | |
| PANTHER | 38 | 405 | 368 | 5.60E-34 | – | |
| PANTHER | 38 | 405 | 368 | 5.60E-34 | – | |
| Pfam | 44 | 53 | 10 | 0.17 | ||
| Pfam | 54 | 63 | 10 | 0.18 | ||
| Pfam | 64 | 73 | 10 | 0.18 | ||
| Pfam | 74 | 83 | 10 | 0.18 | ||
| Pfam | 84 | 93 | 10 | 0.18 | ||
| Pfam | 94 | 103 | 10 | 0.18 | ||
| Pfam | 104 | 113 | 10 | 0.18 | ||
| Pfam | 114 | 123 | 10 | 0.18 | ||
| Pfam | 124 | 133 | 10 | 0.18 | ||
| Pfam | 134 | 143 | 10 | 0.18 | ||
| MobiDBLite | 141 | 229 | 89 | – | – | |
| Pfam | 144 | 153 | 10 | 0.18 | ||
| Pfam | 154 | 163 | 10 | 0.18 | ||
| PRINTS | 158 | 179 | 22 | 2.00E-05 | ||
| Pfam | 164 | 173 | 10 | 0.18 | ||
| Pfam | 174 | 183 | 10 | 0.18 | ||
| Pfam | 184 | 193 | 10 | 0.18 | ||
| Pfam | 194 | 203 | 10 | 0.18 | ||
| Pfam | 204 | 213 | 10 | 0.18 | ||
| Pfam | 214 | 223 | 10 | 0.66 | ||
| PRINTS | 217 | 234 | 18 | 2.00E-05 | ||
| Pfam | 224 | 233 | 10 | 0.6 | ||
| Pfam | 234 | 243 | 10 | 0.18 | ||
| PRINTS | 243 | 262 | 20 | 2.00E-05 | ||
| Pfam | 244 | 253 | 10 | 0.18 | ||
| MobiDBLite | 246 | 315 | 70 | – | – | |
| Pfam | 254 | 263 | 10 | 0.18 | ||
| Pfam | 264 | 273 | 10 | 0.18 | ||
| Pfam | 274 | 283 | 10 | 0.18 | ||
| Pfam | 284 | 293 | 10 | 0.18 | ||
| Pfam | 294 | 303 | 10 | 0.18 | ||
| Pfam | 304 | 313 | 10 | 0.6 | ||
| Pfam | 314 | 323 | 10 | 0.6 | ||
| Pfam | 324 | 333 | 10 | 0.18 | ||
| Pfam | 334 | 343 | 10 | 0.18 | ||
| MobiDBLite | 337 | 415 | 79 | – | – | |
| Pfam | 344 | 353 | 10 | 0.18 | ||
| Pfam | 354 | 363 | 10 | 0.18 | ||
| Pfam | 364 | 373 | 10 | 0.17 | ||
| Pfam | 374 | 383 | 10 | 0.18 | ||
| Pfam | 384 | 393 | 10 | 0.05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of cell wall | The action of a molecule that contributes to the structural integrity of a cell wall. | ||
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
Expression pattern of Lj3g3v0462220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0462220.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.