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Lj3g3v0807570.1

Overview

Field Value
Gene ID Lj3g3v0807570
Transcript ID Lj3g3v0807570.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: retinoblastoma-binding protein 5-like [Glycine max] gi|356517730|ref|XP_003527539.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00320
13 51 39 0.11
IPR001680
ProSiteProfiles
PS50294
19 104 86 13.791
IPR017986
SUPERFAMILY
SSF50978
23 245 223 4.58E-41
IPR017986
Gene3D
G3DSA:2.130.10.10
24 113 90 2.60E-41
IPR015943
PANTHER
PTHR22847
28 119 92 1.50E-59 –
PANTHER
PTHR22847:SF461
28 119 92 1.50E-59 –
Pfam
PF00400
28 51 24 0.0041
IPR001680
ProSitePatterns
PS00678
38 52 15 –
IPR019775
SMART
SM00320
54 95 42 0.0019
IPR001680
ProSiteProfiles
PS50082
63 104 42 10.442
IPR001680
Pfam
PF00400
65 95 31 0.067
IPR001680
Gene3D
G3DSA:2.130.10.10
164 412 249 2.60E-41
IPR015943
PANTHER
PTHR22847
185 245 61 1.50E-59 –
PANTHER
PTHR22847:SF461
185 245 61 1.50E-59 –
SMART
SM00320
203 244 42 0.68
IPR001680
PANTHER
PTHR22847
275 417 143 1.50E-59 –
PANTHER
PTHR22847:SF461
275 417 143 1.50E-59 –
SMART
SM00320
276 323 48 110
IPR001680
SUPERFAMILY
SSF50978
278 363 86 4.58E-41
IPR017986
Pfam
PF00400
278 323 46 0.18
IPR001680
SMART
SM00320
325 364 40 0.0028
IPR001680
MobiDBLite
mobidb-lite
439 539 101 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj3g3v0807570.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0807570.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.