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Lj3g3v0950930.1

Overview

Field Value
Gene ID Lj3g3v0950930
Transcript ID Lj3g3v0950930.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein methyltransferase hemK homolog [Glycine max] gi|356525752|ref|XP_003531487.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 23 23 – –
TIGRFAM
TIGR00536
67 307 241 8.50E-46
IPR004556
PANTHER
PTHR18895
89 308 220 3.20E-70 –
PANTHER
PTHR18895:SF74
89 308 220 3.20E-70 –
SUPERFAMILY
SSF53335
112 300 189 4.59E-34
IPR029063
Gene3D
G3DSA:3.40.50.150
154 308 155 2.60E-42
IPR029063
Pfam
PF06325
185 237 53 5.10E-07 –
CDD
cd02440
187 267 81 1.80E-06 –
ProSitePatterns
PS00092
256 262 7 –
IPR002052

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0006479
Biological process Protein methylation The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0008276
Molecular function Protein methyltransferase activity Catalysis of the transfer of a methyl group (CH3-) to a protein.
Subterm of
GO:0032259
Biological process Methylation The process in which a methyl group is covalently attached to a molecule.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj3g3v0950930.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0950930.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.