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Lj3g3v1011000.1

Overview

Field Value
Gene ID Lj3g3v1011000
Transcript ID Lj3g3v1011000.1
Lotus japonicus genome version MG20 v3.0
Description F-box/LRR-repeat protein [Medicago truncatula] gi|357486867|ref|XP_003613721.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32212
2 315 314 2.30E-61 –
ProSiteProfiles
PS50181
22 68 47 9.603
IPR001810
Gene3D
G3DSA:3.80.10.10
22 64 43 1.20E-12
IPR032675
SUPERFAMILY
SSF81383
23 64 42 1.70E-10
IPR001810
Pfam
PF00646
25 63 39 7.30E-05
IPR001810
Gene3D
G3DSA:3.80.10.10
117 271 155 1.20E-12
IPR032675
SUPERFAMILY
SSF52058
144 313 170 1.12E-07
IPR032675
Pfam
PF07723
177 202 26 2.10E-07
IPR013101

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj3g3v1011000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1011000.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.