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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1015510 |
| Transcript ID | Lj3g3v1015510.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Glycine max] gi|356556906|ref|XP_003546761.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | – | – | |
| TMHMM | 9 | 28 | 20 | – | – | |
| Phobius | 12 | 30 | 19 | – | – | |
| Phobius | 31 | 940 | 910 | – | – | |
| SUPERFAMILY | 76 | 118 | 43 | 1.34E-09 | – | |
| ProSiteProfiles | 79 | 116 | 38 | 10.168 | ||
| Pfam | 79 | 116 | 38 | 2.60E-07 | ||
| MobiDBLite | 353 | 372 | 20 | – | – | |
| SUPERFAMILY | 469 | 778 | 310 | 6.48E-85 | – | |
| CDD | 471 | 776 | 306 | 1.16E-159 | – | |
| ProSiteProfiles | 472 | 778 | 307 | 49.459 | ||
| PANTHER | 473 | 811 | 339 | 4.90E-242 | – | |
| Pfam | 473 | 775 | 303 | 2.10E-43 | ||
| PANTHER | 473 | 811 | 339 | 4.90E-242 | – | |
| ProSitePatterns | 473 | 488 | 16 | – | ||
| Gene3D | 599 | 669 | 71 | 7.70E-11 | – | |
| MobiDBLite | 785 | 828 | 44 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of Lj3g3v1015510.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1015510.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.