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Lj3g3v1339050.1

Overview

Field Value
Gene ID Lj3g3v1339050
Transcript ID Lj3g3v1339050.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: serine/threonine-protein kinase Nek2-like [Glycine max] gi|356536779|ref|XP_003536912.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF56112
1 316 316 1.37E-81
IPR011009
PANTHER
PTHR24362:SF277
1 304 304 6.30E-300 –
PANTHER
PTHR24362
1 304 304 6.30E-300 –
Gene3D
G3DSA:3.30.200.20
2 114 113 2.00E-30 –
CDD
cd08215
3 258 256 5.97E-134 –
Pfam
PF00069
4 257 254 3.70E-63
IPR000719
SMART
SM00220
4 258 255 1.70E-81
IPR000719
ProSiteProfiles
PS50011
4 258 255 45.304
IPR000719
ProSitePatterns
PS00107
10 33 24 –
IPR017441
Gene3D
G3DSA:1.10.510.10
115 259 145 6.00E-48 –
ProSitePatterns
PS00108
125 137 13 –
IPR008271
PANTHER
PTHR24362:SF277
320 484 165 6.30E-300 –
PANTHER
PTHR24362
320 484 165 6.30E-300 –
MobiDBLite
mobidb-lite
396 418 23 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj3g3v1339050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1339050.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.