Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v1543510.1

Overview

Field Value
Gene ID Lj3g3v1543510
Transcript ID Lj3g3v1543510.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: polycomb group protein FIE2-like [Glycine max] gi|356502840|ref|XP_003520223.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:2.130.10.10
21 366 346 3.50E-45
IPR015943
PANTHER
PTHR10253
22 371 350 4.90E-190 –
SUPERFAMILY
SSF50978
24 206 183 9.16E-45
IPR017986
ProSiteProfiles
PS50294
80 373 294 19.696
IPR017986
SMART
SM00320
83 115 33 90
IPR001680
SMART
SM00320
118 158 41 0.0017
IPR001680
Pfam
PF00400
123 158 36 0.038
IPR001680
ProSiteProfiles
PS50082
125 167 43 10.776
IPR001680
ProSitePatterns
PS00678
145 159 15 –
IPR019775
PRINTS
PR00320
145 159 15 2.60E-05
IPR020472
SMART
SM00320
161 204 44 5.30E-09
IPR001680
Pfam
PF00400
164 204 41 4.80E-05
IPR001680
ProSiteProfiles
PS50082
171 213 43 12.38
IPR001680
PRINTS
PR00320
191 205 15 2.60E-05
IPR020472
SMART
SM00320
230 267 38 21
IPR001680
SUPERFAMILY
SSF50978
239 366 128 9.16E-45
IPR017986
PRINTS
PR00320
254 268 15 2.60E-05
IPR020472
SMART
SM00320
279 320 42 330
IPR001680
SMART
SM00320
325 366 42 0.52
IPR001680

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj3g3v1543510.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1543510.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.