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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1729090 |
| Transcript ID | Lj3g3v1729090.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Cicer arietinum] gi|502082664|ref|XP_004487236.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | – | – | |
| MobiDBLite | 61 | 323 | 263 | – | – | |
| PANTHER | 153 | 222 | 70 | 0 | – | |
| PANTHER | 153 | 222 | 70 | 0 | – | |
| PANTHER | 394 | 898 | 505 | 0 | – | |
| PANTHER | 394 | 898 | 505 | 0 | – | |
| SMART | 557 | 745 | 189 | 2.70E-26 | ||
| SUPERFAMILY | 564 | 899 | 336 | 4.41E-79 | ||
| ProSiteProfiles | 573 | 736 | 164 | 18.167 | ||
| Gene3D | 580 | 720 | 141 | 6.00E-47 | ||
| Pfam | 580 | 686 | 107 | 3.50E-06 | ||
| CDD | 586 | 718 | 133 | 2.68E-28 | – | |
| CDD | 743 | 897 | 155 | 9.52E-09 | – | |
| ProSiteProfiles | 758 | 903 | 146 | 12.715 | ||
| Pfam | 768 | 897 | 130 | 8.50E-13 | ||
| Gene3D | 770 | 897 | 128 | 7.50E-10 | ||
| SMART | 793 | 897 | 105 | 4.60E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj3g3v1729090.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1729090.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.