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Lj3g3v1778650.1

Overview

Field Value
Gene ID Lj3g3v1778650
Transcript ID Lj3g3v1778650.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: AP2-like ethylene-responsive transcription factor PLT2-like [Glycine max] gi|356541922|ref|XP_003539421.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32467:SF12
18 531 514 3.70E-284 –
PANTHER
PTHR32467
18 531 514 3.70E-284
IPR031112
CDD
cd00018
177 243 67 1.48E-19
IPR001471
SUPERFAMILY
SSF54171
177 243 67 7.19E-15
IPR016177
Pfam
PF00847
177 233 57 9.10E-09
IPR001471
ProSiteProfiles
PS51032
178 241 64 17.504
IPR001471
Gene3D
G3DSA:3.30.730.10
178 242 65 3.30E-12
IPR001471
SMART
SM00380
178 247 70 3.20E-23
IPR001471
PRINTS
PR00367
179 190 12 2.40E-06
IPR001471
ProSiteProfiles
PS51032
259 318 60 16.463
IPR001471
Pfam
PF00847
264 310 47 4.30E-08
IPR001471
SMART
SM00380
264 324 61 1.40E-26
IPR001471
CDD
cd00018
264 320 57 7.49E-21
IPR001471
SUPERFAMILY
SSF54171
266 320 55 6.02E-15
IPR016177
Gene3D
G3DSA:3.30.730.10
266 319 54 6.60E-15
IPR001471
PRINTS
PR00367
300 320 21 2.40E-06
IPR001471

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj3g3v1778650.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1778650.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.