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Lj3g3v1933120.1

Overview

Field Value
Gene ID Lj3g3v1933120
Transcript ID Lj3g3v1933120.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: photosystem I reaction center subunit V, chloroplastic-like [Cicer arietinum] gi|502127398|ref|XP_004499692.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF002912
1 162 162 6.20E-66
IPR016370
Phobius
NON_CYTOPLASMIC_DOMAIN
1 67 67 – –
PANTHER
PTHR34195
21 161 141 3.70E-90 –
PANTHER
PTHR34195:SF1
21 161 141 3.70E-90 –
TMHMM
TMhelix
64 86 23 – –
Pfam
PF01241
65 156 92 2.00E-26
IPR000549
Gene3D
G3DSA:1.10.286.40
66 160 95 4.00E-45
IPR023618
Phobius
TRANSMEMBRANE
68 88 21 – –
TIGRFAM
TIGR03051
69 157 89 3.20E-44
IPR017494
Phobius
CYTOPLASMIC_DOMAIN
89 162 74 – –
TMHMM
TMhelix
127 149 23 – –
ProSitePatterns
PS01026
128 145 18 –
IPR000549

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009522
Cellular component Photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
Subterm of
GO:0015979
Biological process Photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
Subterm of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj3g3v1933120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1933120.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.