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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2027290 |
| Transcript ID | Lj3g3v2027290.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: synaptic vesicle 2-related protein-like [Glycine max] gi|356523480|ref|XP_003530366.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | – | – | |
| PANTHER | 5 | 254 | 250 | 2.80E-246 | – | |
| PANTHER | 5 | 254 | 250 | 2.80E-246 | – | |
| Phobius | 14 | 35 | 22 | – | – | |
| TMHMM | 15 | 37 | 23 | – | – | |
| SUPERFAMILY | 17 | 226 | 210 | 2.35E-61 | ||
| Gene3D | 24 | 221 | 198 | 1.40E-26 | – | |
| ProSiteProfiles | 27 | 477 | 451 | 35.878 | ||
| CDD | 31 | 473 | 443 | 1.04E-24 | ||
| Phobius | 36 | 41 | 6 | – | – | |
| Phobius | 42 | 59 | 18 | – | – | |
| Pfam | 59 | 226 | 168 | 5.90E-31 | ||
| Phobius | 60 | 64 | 5 | – | – | |
| TMHMM | 64 | 83 | 20 | – | – | |
| Phobius | 65 | 82 | 18 | – | – | |
| Phobius | 83 | 93 | 11 | – | – | |
| TMHMM | 93 | 110 | 18 | – | – | |
| Phobius | 94 | 112 | 19 | – | – | |
| Phobius | 113 | 117 | 5 | – | – | |
| TMHMM | 117 | 139 | 23 | – | – | |
| Phobius | 118 | 139 | 22 | – | – | |
| Phobius | 140 | 150 | 11 | – | – | |
| TMHMM | 149 | 171 | 23 | – | – | |
| Phobius | 151 | 172 | 22 | – | – | |
| Phobius | 173 | 177 | 5 | – | – | |
| TMHMM | 176 | 195 | 20 | – | – | |
| Phobius | 178 | 196 | 19 | – | – | |
| Phobius | 197 | 286 | 90 | – | – | |
| SUPERFAMILY | 269 | 482 | 214 | 2.35E-61 | ||
| PANTHER | 278 | 315 | 38 | 2.80E-246 | – | |
| PANTHER | 278 | 315 | 38 | 2.80E-246 | – | |
| Phobius | 287 | 308 | 22 | – | – | |
| TMHMM | 291 | 313 | 23 | – | – | |
| Phobius | 309 | 338 | 30 | – | – | |
| PANTHER | 332 | 484 | 153 | 2.80E-246 | – | |
| PANTHER | 332 | 484 | 153 | 2.80E-246 | – | |
| Phobius | 339 | 357 | 19 | – | – | |
| Gene3D | 339 | 481 | 143 | 1.70E-13 | – | |
| Pfam | 351 | 481 | 131 | 2.00E-09 | ||
| ProSitePatterns | 353 | 368 | 16 | – | ||
| Phobius | 358 | 368 | 11 | – | – | |
| TMHMM | 364 | 383 | 20 | – | – | |
| Phobius | 369 | 385 | 17 | – | – | |
| Phobius | 386 | 390 | 5 | – | – | |
| TMHMM | 388 | 410 | 23 | – | – | |
| Phobius | 391 | 411 | 21 | – | – | |
| Phobius | 412 | 422 | 11 | – | – | |
| Phobius | 423 | 446 | 24 | – | – | |
| TMHMM | 423 | 445 | 23 | – | – | |
| Phobius | 447 | 451 | 5 | – | – | |
| Phobius | 452 | 472 | 21 | – | – | |
| TMHMM | 455 | 474 | 20 | – | – | |
| Phobius | 473 | 487 | 15 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v2027290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2027290.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.