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Lj3g3v2054320.1

Overview

Field Value
Gene ID Lj3g3v2054320
Transcript ID Lj3g3v2054320.1
Lotus japonicus genome version MG20 v3.0
Description cytochrome oxidase subunit III [Amborella trichopoda] gi|57639755|gb|AAW55720.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd01665
1 72 72 4.21E-40
IPR033945
PANTHER
PTHR11403
1 70 70 1.60E-45
IPR024791
Gene3D
G3DSA:1.20.120.80
1 70 70 2.10E-30
IPR013833
Pfam
PF00510
1 72 72 3.60E-32
IPR000298
SUPERFAMILY
SSF81452
1 70 70 1.06E-32
IPR000298
ProSiteProfiles
PS50253
1 72 72 18.39
IPR000298
PANTHER
PTHR11403:SF7
1 70 70 1.60E-45 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 19 19 – –
Phobius
TRANSMEMBRANE
20 42 23 – –
TMHMM
TMhelix
20 42 23 – –
Phobius
CYTOPLASMIC_DOMAIN
43 72 30 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004129
Molecular function Cytochrome-c oxidase activity Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
Subterm of
GO:0015002
Molecular function Heme-copper terminal oxidase activity Catalysis of the four-electron reduction of dioxygen (O2) to water, coupled to generation of a proton electrochemical gradient across a membrane.
Subterm of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0019646
Biological process Aerobic electron transport chain A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to oxygen to generate a transmembrane electrochemical gradient.
Subterm of
GO:0022904
Biological process Respiratory electron transport chain A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
Subterm of
Part of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v2054320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2054320.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.