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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2316600 |
| Transcript ID | Lj3g3v2316600.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Protodermal factor 2 isoform 1 [Theobroma cacao] gi|508781368|gb|EOY28624.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 445 | 445 | – | – | |
| MobiDBLite | 15 | 35 | 21 | – | – | |
| PANTHER | 61 | 79 | 19 | 6.10E-107 | – | |
| PANTHER | 61 | 79 | 19 | 6.10E-107 | – | |
| Coils | 73 | 93 | 21 | – | – | |
| PANTHER | 108 | 121 | 14 | 6.10E-107 | – | |
| PANTHER | 108 | 121 | 14 | 6.10E-107 | – | |
| Coils | 115 | 135 | 21 | – | – | |
| ProSiteProfiles | 185 | 381 | 197 | 27.936 | ||
| SUPERFAMILY | 188 | 380 | 193 | 1.79E-25 | – | |
| CDD | 192 | 377 | 186 | 5.35E-80 | – | |
| SMART | 194 | 378 | 185 | 8.10E-25 | ||
| Gene3D | 261 | 377 | 117 | 5.60E-08 | ||
| Pfam | 268 | 378 | 111 | 7.10E-32 | ||
| PANTHER | 354 | 633 | 280 | 6.10E-107 | – | |
| PANTHER | 354 | 633 | 280 | 6.10E-107 | – | |
| SUPERFAMILY | 396 | 629 | 234 | 4.12E-14 | – | |
| Phobius | 446 | 468 | 23 | – | – | |
| TMHMM | 446 | 468 | 23 | – | – | |
| Phobius | 469 | 637 | 169 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of Lj3g3v2316600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2316600.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.