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Lj3g3v2330830.1

Overview

Field	Value
Gene ID	Lj3g3v2330830
Transcript ID	Lj3g3v2330830.1
Related isoforms 1	Lj3g3v2330830.2
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 2-like [Glycine max] gi\|356520430\|ref\|XP_003528865.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	34	34	–	–
PANTHER	PTHR33101:SF9 View details on PTHR33101:SF9 Search for proteins/transripts with this domain View external data on PTHR33101:SF9	1	225	225	6.10E-121	–
PANTHER	PTHR33101 View details on PTHR33101 Search for proteins/transripts with this domain View external data on PTHR33101	1	225	225	6.10E-121	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	54	76	23	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	97	117	21	–	–
ProSiteProfiles	PS51334 View details on PS51334 Search for proteins/transripts with this domain View external data on PS51334	101	235	135	42.149	IPR005512 Show description in modal box View details on IPR005512 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03759 View details on PF03759 Search for proteins/transripts with this domain View external data on PF03759	109	226	118	3.00E-61	IPR005512 Show description in modal box View details on IPR005512 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005089 View details of GO:0005089 AmiGO InterPro QuickGO	Molecular function	Rho guanyl-nucleotide exchange factor activity	Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.	Subterm of View details of GO:0005088 View details of GO:0017048

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj3g3v2330830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2330830.1, powered by CORGI.

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