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Lj3g3v2385550.1

Overview

Field Value
Gene ID Lj3g3v2385550
Transcript ID Lj3g3v2385550.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 2-like [Cicer arietinum] gi|502142062|ref|XP_004504774.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP 1 40 40
ProSiteProfiles 1 28 28 5
SignalP 1 33 33
Phobius 1 33 33
Phobius 1 12 12
Phobius 13 28 16
TMHMM 13 35 23
PANTHER 21 371 351 2.00E-249
PANTHER 21 371 351 2.00E-249
Phobius 29 33 5
Phobius 34 392 359
Gene3D 54 374 321 2.00E-103
SUPERFAMILY 54 377 324 2.11E-83
Pfam 121 362 242 7.70E-37
PRINTS 125 144 20 3.70E-07
PRINTS 215 231 17 3.70E-07
PRINTS 289 307 19 3.70E-07

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Expression data

Expression pattern

Expression pattern of Lj3g3v2385550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2385550.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.