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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2517640 |
| Transcript ID | Lj3g3v2517640.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | zinc ion transmembrane transporter [Medicago sativa] gi|238684576|gb|ACR54455.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 88 | 88 | – | – | |
| MobiDBLite | 1 | 28 | 28 | – | – | |
| PANTHER | 76 | 229 | 154 | 4.20E-133 | ||
| PANTHER | 76 | 229 | 154 | 4.20E-133 | – | |
| SUPERFAMILY | 83 | 215 | 133 | 7.72E-50 | – | |
| TIGRFAM | 86 | 381 | 296 | 3.20E-77 | ||
| Gene3D | 87 | 215 | 129 | 2.80E-59 | ||
| Pfam | 89 | 366 | 278 | 5.50E-47 | ||
| TMHMM | 89 | 108 | 20 | – | – | |
| Phobius | 89 | 108 | 20 | – | – | |
| Phobius | 109 | 119 | 11 | – | – | |
| TMHMM | 119 | 141 | 23 | – | – | |
| Phobius | 120 | 139 | 20 | – | – | |
| Phobius | 140 | 150 | 11 | – | – | |
| Phobius | 151 | 178 | 28 | – | – | |
| TMHMM | 153 | 175 | 23 | – | – | |
| Phobius | 179 | 189 | 11 | – | – | |
| Phobius | 190 | 211 | 22 | – | – | |
| TMHMM | 190 | 212 | 23 | – | – | |
| Phobius | 212 | 307 | 96 | – | – | |
| MobiDBLite | 217 | 300 | 84 | – | – | |
| SUPERFAMILY | 298 | 367 | 70 | 7.72E-50 | – | |
| Gene3D | 298 | 366 | 69 | 2.80E-59 | ||
| PANTHER | 299 | 383 | 85 | 4.20E-133 | ||
| PANTHER | 299 | 383 | 85 | 4.20E-133 | – | |
| Phobius | 308 | 331 | 24 | – | – | |
| TMHMM | 308 | 330 | 23 | – | – | |
| Phobius | 332 | 336 | 5 | – | – | |
| Phobius | 337 | 358 | 22 | – | – | |
| TMHMM | 340 | 362 | 23 | – | – | |
| Phobius | 359 | 383 | 25 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v2517640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2517640.1, powered by CORGI.
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