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Lj3g3v2574480.1

Overview

Field Value
Gene ID Lj3g3v2574480
Transcript ID Lj3g3v2574480.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pectinesterase/pectinesterase inhibitor U1-like [Glycine max] gi|356520174|ref|XP_003528739.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 43 43 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 26 26 – –
PANTHER
PTHR31707:SF55
24 370 347 7.80E-203 –
PANTHER
PTHR31707
24 370 347 7.80E-203 –
TMHMM
TMhelix
27 49 23 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
27 38 12 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
39 43 5 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
44 370 327 – –
TIGRFAM
TIGR01614
56 235 180 1.70E-25
IPR006501
SMART
SM00856
71 231 161 1.60E-36
IPR006501
Gene3D
G3DSA:1.20.140.40
73 236 164 3.10E-37
IPR006501
SUPERFAMILY
SSF101148
74 236 163 2.75E-33
IPR006501
Pfam
PF04043
75 231 157 1.10E-26
IPR006501
CDD
cd15798
78 236 159 1.76E-33 –
Coils
Coil
146 166 21 – –
SUPERFAMILY
SSF51126
281 370 90 3.61E-29
IPR011050
Gene3D
G3DSA:2.160.20.10
282 368 87 2.00E-30
IPR012334
Pfam
PF01095
285 370 86 1.10E-32
IPR000070

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004857
Molecular function Enzyme inhibitor activity Binds to and stops, prevents or reduces the activity of an enzyme.
Subterm of
GO:0030599
Molecular function Pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
Subterm of
GO:0042545
Biological process Cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v2574480.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2574480.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.