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Lj3g3v2575990.1

Overview

Field Value
Gene ID Lj3g3v2575990
Transcript ID Lj3g3v2575990.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: CCAAT/enhancer-binding protein zeta-like [Cicer arietinum] gi|502156598|ref|XP_004510554.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 528 528 – –
MobiDBLite
mobidb-lite
1 107 107 – –
PANTHER
PTHR12048
16 572 557 6.60E-218 –
Gene3D
G3DSA:1.25.10.10
202 244 43 2.00E-05
IPR011989
SUPERFAMILY
SSF48371
286 417 132 1.37E-07
IPR016024
Gene3D
G3DSA:1.25.10.10
297 377 81 2.00E-05
IPR011989
MobiDBLite
mobidb-lite
426 448 23 – –
SUPERFAMILY
SSF48371
447 575 129 1.37E-07
IPR016024
Gene3D
G3DSA:1.25.10.10
452 567 116 2.00E-05
IPR011989
Pfam
PF03914
501 588 88 1.40E-21
IPR005612
Phobius
TRANSMEMBRANE
529 547 19 – –
Phobius
CYTOPLASMIC_DOMAIN
548 566 19 – –
TMHMM
TMhelix
567 584 18 – –
Phobius
TRANSMEMBRANE
567 584 18 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
585 641 57 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj3g3v2575990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2575990.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.