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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2612440 |
| Transcript ID | Lj3g3v2612440.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | AP2-like ethylene-responsive transcription factor ANT [Medicago truncatula] gi|357513955|ref|XP_003627266.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 253 | 253 | 4.10E-126 | ||
| PANTHER | 1 | 253 | 253 | 4.10E-126 | – | |
| SUPERFAMILY | 25 | 86 | 62 | 2.48E-18 | ||
| Pfam | 25 | 76 | 52 | 1.80E-10 | ||
| CDD | 25 | 86 | 62 | 1.95E-26 | ||
| Gene3D | 26 | 84 | 59 | 3.80E-19 | ||
| SMART | 26 | 90 | 65 | 3.60E-34 | ||
| ProSiteProfiles | 26 | 84 | 59 | 19.006 | ||
| PRINTS | 27 | 38 | 12 | 3.10E-05 | ||
| PRINTS | 66 | 86 | 21 | 3.10E-05 | ||
| MobiDBLite | 123 | 145 | 23 | – | – | |
| MobiDBLite | 160 | 203 | 44 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of Lj3g3v2612440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2612440.1, powered by CORGI.
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