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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2809290 |
| Transcript ID | Lj3g3v2809290.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: two pore calcium channel protein 1-like isoform X1 [Cicer arietinum] gi|502082803|ref|XP_004487278.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 73 | 73 | – | – | |
| Phobius | 74 | 91 | 18 | – | – | |
| TMHMM | 76 | 98 | 23 | – | – | |
| Phobius | 92 | 123 | 32 | – | – | |
| TMHMM | 118 | 140 | 23 | – | – | |
| Phobius | 124 | 144 | 21 | – | – | |
| Pfam | 131 | 311 | 181 | 5.60E-12 | ||
| Phobius | 145 | 155 | 11 | – | – | |
| PANTHER | 150 | 321 | 172 | 3.90E-131 | – | |
| Phobius | 156 | 176 | 21 | – | – | |
| TMHMM | 160 | 182 | 23 | – | – | |
| Phobius | 177 | 181 | 5 | – | – | |
| Phobius | 182 | 202 | 21 | – | – | |
| Phobius | 203 | 222 | 20 | – | – | |
| TMHMM | 219 | 241 | 23 | – | – | |
| Phobius | 223 | 241 | 19 | – | – | |
| Phobius | 242 | 282 | 41 | – | – | |
| TMHMM | 248 | 270 | 23 | – | – | |
| Phobius | 283 | 308 | 26 | – | – | |
| TMHMM | 285 | 307 | 23 | – | – | |
| Phobius | 309 | 432 | 124 | – | – | |
| SUPERFAMILY | 320 | 412 | 93 | 1.87E-10 | ||
| Gene3D | 320 | 405 | 86 | 6.60E-10 | ||
| ProSiteProfiles | 325 | 360 | 36 | 7.233 | ||
| PANTHER | 344 | 373 | 30 | 3.90E-131 | – | |
| ProSiteProfiles | 366 | 401 | 36 | 9.353 | ||
| PANTHER | 424 | 688 | 265 | 3.90E-131 | – | |
| Gene3D | 431 | 547 | 117 | 1.30E-09 | ||
| SUPERFAMILY | 431 | 678 | 248 | 7.45E-20 | – | |
| Pfam | 432 | 678 | 247 | 1.90E-39 | ||
| Phobius | 433 | 451 | 19 | – | – | |
| TMHMM | 433 | 455 | 23 | – | – | |
| Phobius | 452 | 470 | 19 | – | – | |
| TMHMM | 468 | 490 | 23 | – | – | |
| Phobius | 471 | 489 | 19 | – | – | |
| Phobius | 490 | 500 | 11 | – | – | |
| Phobius | 501 | 520 | 20 | – | – | |
| TMHMM | 503 | 520 | 18 | – | – | |
| Phobius | 521 | 531 | 11 | – | – | |
| Phobius | 532 | 549 | 18 | – | – | |
| Phobius | 550 | 560 | 11 | – | – | |
| TMHMM | 557 | 579 | 23 | – | – | |
| Phobius | 561 | 590 | 30 | – | – | |
| Phobius | 591 | 651 | 61 | – | – | |
| TMHMM | 652 | 674 | 23 | – | – | |
| Phobius | 652 | 675 | 24 | – | – | |
| Phobius | 676 | 737 | 62 | – | – | |
| MobiDBLite | 690 | 714 | 25 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v2809290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2809290.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.