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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2809290 |
| Transcript ID | Lj3g3v2809290.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: two pore calcium channel protein 1-like isoform X1 [Cicer arietinum] gi|502082803|ref|XP_004487278.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | – | – | |
| PANTHER | 1 | 152 | 152 | 3.30E-125 | – | |
| TMHMM | 10 | 29 | 20 | – | – | |
| Phobius | 12 | 33 | 22 | – | – | |
| Pfam | 13 | 142 | 130 | 5.00E-10 | ||
| Phobius | 34 | 52 | 19 | – | – | |
| TMHMM | 50 | 72 | 23 | – | – | |
| Phobius | 53 | 72 | 20 | – | – | |
| Phobius | 73 | 78 | 6 | – | – | |
| Phobius | 79 | 96 | 18 | – | – | |
| Phobius | 97 | 115 | 19 | – | – | |
| Phobius | 116 | 139 | 24 | – | – | |
| TMHMM | 116 | 138 | 23 | – | – | |
| Phobius | 140 | 263 | 124 | – | – | |
| Gene3D | 151 | 233 | 83 | 7.70E-10 | ||
| SUPERFAMILY | 151 | 243 | 93 | 1.22E-10 | ||
| ProSiteProfiles | 156 | 191 | 36 | 7.233 | ||
| Pfam | 162 | 226 | 65 | 5.70E-07 | ||
| PANTHER | 175 | 204 | 30 | 3.30E-125 | – | |
| ProSiteProfiles | 197 | 232 | 36 | 9.353 | ||
| PANTHER | 255 | 519 | 265 | 3.30E-125 | – | |
| Gene3D | 262 | 378 | 117 | 9.80E-10 | ||
| SUPERFAMILY | 262 | 509 | 248 | 3.61E-20 | – | |
| Pfam | 263 | 509 | 247 | 1.10E-39 | ||
| TMHMM | 264 | 286 | 23 | – | – | |
| Phobius | 264 | 282 | 19 | – | – | |
| Phobius | 283 | 301 | 19 | – | – | |
| TMHMM | 299 | 321 | 23 | – | – | |
| Phobius | 302 | 320 | 19 | – | – | |
| Phobius | 321 | 331 | 11 | – | – | |
| Phobius | 332 | 351 | 20 | – | – | |
| TMHMM | 334 | 351 | 18 | – | – | |
| Phobius | 352 | 362 | 11 | – | – | |
| Phobius | 363 | 380 | 18 | – | – | |
| Phobius | 381 | 391 | 11 | – | – | |
| TMHMM | 388 | 410 | 23 | – | – | |
| Phobius | 392 | 421 | 30 | – | – | |
| Phobius | 422 | 482 | 61 | – | – | |
| TMHMM | 483 | 505 | 23 | – | – | |
| Phobius | 483 | 506 | 24 | – | – | |
| Phobius | 507 | 568 | 62 | – | – | |
| MobiDBLite | 521 | 545 | 25 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v2809290.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2809290.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.