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Lj3g3v2812180.1

Overview

Field Value
Gene ID Lj3g3v2812180
Transcript ID Lj3g3v2812180.1
Lotus japonicus genome version MG20 v3.0
Description nuclear cap-binding protein [Nicotiana tabacum] gi|224460055|gb|ACN43578.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR18847
1 226 226 4.10E-138
IPR027157
PANTHER
PTHR18847:SF0
1 226 226 4.10E-138 –
Gene3D
G3DSA:3.30.70.330
10 118 109 1.60E-31
IPR012677
SUPERFAMILY
SSF54928
28 144 117 1.30E-32
IPR012677
ProSiteProfiles
PS50102
34 112 79 15.375
IPR000504
SMART
SM00360
35 108 74 2.00E-23
IPR000504
Pfam
PF00076
36 106 71 5.00E-15
IPR000504
CDD
cd12240
36 113 78 1.67E-50 –
MobiDBLite
mobidb-lite
119 142 24 – –
MobiDBLite
mobidb-lite
161 253 93 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000339
Molecular function RNA cap binding Interacting selectively and non-covalently with a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule.
Subterm of
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005846
Cellular component Nuclear cap binding complex A conserved heterodimeric protein complex that binds to the 5' terminal cap structure m7G(5')ppp(5')N of nascent eukaryotic RNA polymerase II transcripts such as pre-mRNA and U snRNA. The consists of proteins known as CBP20 and CBP80, binds to cap structures in the nucleus, and is involved in pre-mRNA splicing, 3'-end formation, and RNA nuclear export.
Subterm of
GO:0045292
Biological process MRNA cis splicing, via spliceosome The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v2812180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2812180.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.