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Lj3g3v2873580.1

Overview

Field Value
Gene ID Lj3g3v2873580
Transcript ID Lj3g3v2873580.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: external NADH-ubiquinone oxidoreductase 1, mitochondrial-like [Glycine max] gi|356542881|ref|XP_003539893.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10632:SF8
20 386 367 6.50E-17 –
PANTHER
PTHR10632
20 386 367 6.50E-17 –
Gene3D
G3DSA:3.50.50.60
68 184 117 1.40E-17
IPR023753
SUPERFAMILY
SSF51905
72 290 219 1.39E-24
IPR023753
Pfam
PF07992
73 390 318 1.70E-54
IPR023753
Gene3D
G3DSA:3.50.50.60
185 344 160 7.70E-27
IPR023753
SUPERFAMILY
SSF51905
237 391 155 6.49E-18
IPR023753
Gene3D
G3DSA:1.10.238.10
345 469 125 6.20E-07
IPR011992
SUPERFAMILY
SSF47473
348 477 130 7.34E-11
IPR011992
ProSiteProfiles
PS50222
394 429 36 12.84
IPR002048
SMART
SM00054
398 426 29 2.10E-04
IPR002048
ProSitePatterns
PS00018
407 419 13 –
IPR018247

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions 24

Expression data

Expression pattern

Expression pattern of Lj3g3v2873580.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2873580.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.