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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2922150 |
| Transcript ID | Lj3g3v2922150.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cellulose synthase-like protein H1-like [Glycine max] gi|356515296|ref|XP_003526337.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 653 | 653 | 0 | – | |
| Phobius | 1 | 432 | 432 | – | – | |
| PANTHER | 1 | 653 | 653 | 0 | – | |
| Pfam | 1 | 288 | 288 | 2.30E-85 | ||
| SUPERFAMILY | 16 | 59 | 44 | 3.19E-09 | ||
| SUPERFAMILY | 158 | 279 | 122 | 3.19E-09 | ||
| SUPERFAMILY | 360 | 443 | 84 | 3.19E-09 | ||
| Phobius | 433 | 457 | 25 | – | – | |
| TMHMM | 436 | 458 | 23 | – | – | |
| Phobius | 458 | 468 | 11 | – | – | |
| Phobius | 469 | 487 | 19 | – | – | |
| TMHMM | 470 | 487 | 18 | – | – | |
| Phobius | 488 | 506 | 19 | – | – | |
| TMHMM | 507 | 529 | 23 | – | – | |
| Phobius | 507 | 528 | 22 | – | – | |
| Phobius | 529 | 559 | 31 | – | – | |
| Phobius | 560 | 579 | 20 | – | – | |
| TMHMM | 560 | 579 | 20 | – | – | |
| Phobius | 580 | 598 | 19 | – | – | |
| Phobius | 599 | 621 | 23 | – | – | |
| TMHMM | 599 | 621 | 23 | – | – | |
| Phobius | 622 | 653 | 32 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of Lj3g3v2922150.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2922150.1, powered by CORGI.
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