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Lj3g3v3056800.1

Overview

Field Value
Gene ID Lj3g3v3056800
Transcript ID Lj3g3v3056800.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ABC transporter F family member 1-like isoform 1 [Glycine max] gi|356543500|ref|XP_003540198.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19211
1 259 259 2.60E-175 –
MobiDBLite
mobidb-lite
1 23 23 – –
PANTHER
PTHR19211:SF52
1 259 259 2.60E-175 –
SUPERFAMILY
SSF52540
83 162 80 6.91E-27
IPR027417
Gene3D
G3DSA:3.40.50.300
86 259 174 2.80E-27
IPR027417
Pfam
PF00005
103 257 155 2.20E-23
IPR003439
SUPERFAMILY
SSF52540
198 260 63 6.91E-27
IPR027417

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016887
Molecular function ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj3g3v3056800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3056800.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.