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Lj3g3v3211090.2

Overview

Field	Value
Gene ID	Lj3g3v3211090
Transcript ID	Lj3g3v3211090.2
Related isoforms 1	Lj3g3v3211090.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: oxysterol-binding protein-related protein 3C-like [Glycine max] gi\|356558019\|ref\|XP_003547306.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	81	81	–	–
PANTHER	PTHR10972 View details on PTHR10972 Search for proteins/transripts with this domain View external data on PTHR10972	5	452	448	4.30E-178	IPR000648 Show description in modal box View details on IPR000648 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF144000 View details on SSF144000 Search for proteins/transripts with this domain View external data on SSF144000	64	438	375	7.85E-110	–
Pfam	PF01237 View details on PF01237 Search for proteins/transripts with this domain View external data on PF01237	71	423	353	2.00E-101	IPR000648 Show description in modal box View details on IPR000648 Search for proteins/transripts with this domain View on EBI InterPro Service
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	82	102	21	–	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	103	121	19	–	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	122	139	18	–	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	140	457	318	–	–
ProSitePatterns	PS01013 View details on PS01013 Search for proteins/transripts with this domain View external data on PS01013	167	178	12	–	IPR018494 Show description in modal box View details on IPR018494 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	366	392	27	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj3g3v3211090.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3211090.2, powered by CORGI.

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