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Lj3g3v3236640.1

Overview

Field Value
Gene ID Lj3g3v3236640
Transcript ID Lj3g3v3236640.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: copper transporter 2-like [Cicer arietinum] gi|502148393|ref|XP_004507149.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 54 54 – –
PANTHER
PTHR12483
2 132 131 3.80E-51
IPR007274
PANTHER
PTHR12483:SF45
2 132 131 3.80E-51 –
Pfam
PF04145
34 79 46 1.40E-06
IPR007274
Phobius
TRANSMEMBRANE
55 74 20 – –
TMHMM
TMhelix
55 74 20 – –
Phobius
CYTOPLASMIC_DOMAIN
75 85 11 – –
Phobius
TRANSMEMBRANE
86 107 22 – –
Pfam
PF04145
89 132 44 1.30E-10
IPR007274
TMHMM
TMhelix
100 122 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
108 112 5 – –
Phobius
TRANSMEMBRANE
113 133 21 – –
Phobius
CYTOPLASMIC_DOMAIN
134 151 18 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005375
Molecular function Copper ion transmembrane transporter activity Enables the transfer of copper (Cu) ions from one side of a membrane to the other.
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0035434
Biological process Copper ion transmembrane transport The directed movement of copper cation across a membrane.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v3236640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3236640.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.