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Lj3g3v3312810.1

Overview

Field Value
Gene ID Lj3g3v3312810
Transcript ID Lj3g3v3312810.1
Lotus japonicus genome version MG20 v3.0
Description EFR3-like protein [Medicago truncatula] gi|357454465|ref|XP_003597513.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 7 7 – –
SignalP
SignalP-TM_GRAM_POSITIVE
1 23 23 – –
Phobius
SIGNAL_PEPTIDE
1 24 24 – –
PANTHER
PTHR12444:SF2
2 967 966 0 –
PANTHER
PTHR12444
2 967 966 0 –
Phobius
SIGNAL_PEPTIDE_H_REGION
8 19 12 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
20 24 5 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
25 967 943 – –
SUPERFAMILY
SSF48371
61 234 174 2.04E-11
IPR016024
Gene3D
G3DSA:1.25.10.10
107 211 105 9.30E-06
IPR011989
MobiDBLite
mobidb-lite
218 246 29 – –
SUPERFAMILY
SSF48371
265 525 261 2.04E-11
IPR016024
Gene3D
G3DSA:1.25.10.10
316 518 203 9.30E-06
IPR011989
SUPERFAMILY
SSF48371
592 604 13 2.04E-11
IPR016024
SUPERFAMILY
SSF48371
658 713 56 2.04E-11
IPR016024
SUPERFAMILY
SSF48371
755 774 20 2.04E-11
IPR016024
MobiDBLite
mobidb-lite
816 841 26 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj3g3v3312810.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3312810.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.