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Lj3g3v3337450.1

Overview

Field Value
Gene ID Lj3g3v3337450
Transcript ID Lj3g3v3337450.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: vegetative incompatibility protein HET-E-1-like [Vitis vinifera] gi|225428610|ref|XP_002281238.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 20 20 – –
MobiDBLite
mobidb-lite
65 96 32 – –
PANTHER
PTHR22844
72 203 132 8.40E-193 –
PANTHER
PTHR22844:SF145
72 203 132 8.40E-193 –
MobiDBLite
mobidb-lite
107 126 20 – –
SMART
SM00320
127 164 38 0.032
IPR001680
Gene3D
G3DSA:2.130.10.10
129 323 195 1.10E-29
IPR015943
SUPERFAMILY
SSF50978
130 219 90 3.40E-51
IPR017986
CDD
cd00200
138 467 330 7.91E-38 –
Pfam
PF00400
138 164 27 0.11
IPR001680
SMART
SM00320
165 202 38 8.7
IPR001680
SMART
SM00320
237 276 40 0.0098
IPR001680
ProSiteProfiles
PS50294
244 476 233 30.716
IPR017986
PANTHER
PTHR22844:SF145
244 484 241 8.40E-193 –
ProSiteProfiles
PS50082
244 285 42 11.578
IPR001680
PANTHER
PTHR22844
244 484 241 8.40E-193 –
Pfam
PF00400
247 275 29 0.15
IPR001680
SUPERFAMILY
SSF50978
247 478 232 3.40E-51
IPR017986
SMART
SM00320
279 318 40 2.50E-07
IPR001680
Pfam
PF00400
281 317 37 3.60E-04
IPR001680
ProSiteProfiles
PS50082
286 317 32 12.747
IPR001680
SMART
SM00320
327 366 40 0.95
IPR001680
Gene3D
G3DSA:2.130.10.10
332 474 143 1.10E-20
IPR015943
SMART
SM00320
372 409 38 0.0054
IPR001680
Pfam
PF00400
377 409 33 0.037
IPR001680
ProSiteProfiles
PS50082
379 409 31 8.771
IPR001680
SMART
SM00320
415 467 53 7.90E-05
IPR001680
Pfam
PF00400
417 466 50 2.60E-04
IPR001680
MobiDBLite
mobidb-lite
524 1273 750 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v3337450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3337450.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.