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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3338300 |
| Transcript ID | Lj3g3v3338300.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: phospholipase A-2-activating protein-like [Cicer arietinum] gi|502149136|ref|XP_004507405.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 754 | 753 | 0 | ||
| PANTHER | 2 | 754 | 753 | 0 | – | |
| Gene3D | 4 | 166 | 163 | 1.20E-30 | ||
| SUPERFAMILY | 5 | 301 | 297 | 3.85E-61 | ||
| SMART | 7 | 45 | 39 | 4.20E-06 | ||
| CDD | 10 | 289 | 280 | 4.61E-60 | – | |
| Pfam | 12 | 45 | 34 | 0.0022 | ||
| ProSiteProfiles | 14 | 252 | 239 | 23.677 | ||
| ProSiteProfiles | 14 | 54 | 41 | 9.94 | ||
| SMART | 50 | 94 | 45 | 16 | ||
| ProSiteProfiles | 57 | 103 | 47 | 9.506 | ||
| PRINTS | 81 | 95 | 15 | 6.80E-05 | ||
| ProSitePatterns | 81 | 95 | 15 | – | ||
| SMART | 97 | 134 | 38 | 9.80E-04 | ||
| Pfam | 99 | 133 | 35 | 0.14 | ||
| ProSiteProfiles | 104 | 134 | 31 | 8.938 | ||
| SMART | 135 | 173 | 39 | 5.40E-05 | ||
| Pfam | 136 | 172 | 37 | 0.0052 | ||
| ProSiteProfiles | 142 | 172 | 31 | 8.67 | ||
| PRINTS | 160 | 174 | 15 | 6.80E-05 | ||
| Gene3D | 167 | 300 | 134 | 3.30E-28 | ||
| SMART | 174 | 212 | 39 | 2.00E-05 | ||
| Pfam | 176 | 211 | 36 | 3.30E-04 | ||
| ProSiteProfiles | 181 | 211 | 31 | 9.372 | ||
| PRINTS | 199 | 213 | 15 | 6.80E-05 | ||
| SMART | 214 | 252 | 39 | 4.40E-06 | ||
| Pfam | 216 | 252 | 37 | 0.0085 | ||
| ProSiteProfiles | 221 | 252 | 32 | 9.406 | ||
| SMART | 253 | 290 | 38 | 2.90E-04 | ||
| Pfam | 255 | 289 | 35 | 0.0011 | ||
| Pfam | 336 | 444 | 109 | 5.80E-36 | ||
| ProSiteProfiles | 356 | 451 | 96 | 35.544 | ||
| ProSiteProfiles | 480 | 751 | 272 | 27.248 | ||
| Pfam | 482 | 747 | 266 | 1.80E-53 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Ubiquitin binding | Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation. | ||
| Biological process | Proteasome-mediated ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. |
Expression pattern of Lj3g3v3338300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3338300.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.