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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3386830 |
| Transcript ID | Lj3g3v3386830.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Sorbitol-like transporter [Medicago truncatula] gi|357473585|ref|XP_003607077.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | – | – | |
| PANTHER | 10 | 230 | 221 | 3.80E-133 | – | |
| PANTHER | 10 | 230 | 221 | 3.80E-133 | – | |
| SUPERFAMILY | 16 | 228 | 213 | 7.32E-44 | ||
| TMHMM | 26 | 48 | 23 | – | – | |
| Phobius | 26 | 54 | 29 | – | – | |
| Pfam | 30 | 229 | 200 | 1.70E-51 | ||
| ProSiteProfiles | 30 | 230 | 201 | 37.665 | ||
| CDD | 32 | 207 | 176 | 1.75E-22 | ||
| Gene3D | 32 | 214 | 183 | 4.20E-31 | – | |
| PRINTS | 38 | 48 | 11 | 2.80E-07 | ||
| Phobius | 55 | 65 | 11 | – | – | |
| Phobius | 66 | 83 | 18 | – | – | |
| ProSitePatterns | 84 | 101 | 18 | – | ||
| Phobius | 84 | 94 | 11 | – | – | |
| TMHMM | 91 | 113 | 23 | – | – | |
| Phobius | 95 | 113 | 19 | – | – | |
| Phobius | 114 | 118 | 5 | – | – | |
| Phobius | 119 | 141 | 23 | – | – | |
| TMHMM | 120 | 142 | 23 | – | – | |
| PRINTS | 121 | 140 | 20 | 2.80E-07 | ||
| ProSitePatterns | 126 | 151 | 26 | – | ||
| Phobius | 142 | 152 | 11 | – | – | |
| Phobius | 153 | 171 | 19 | – | – | |
| TMHMM | 157 | 176 | 20 | – | – | |
| Phobius | 172 | 182 | 11 | – | – | |
| Phobius | 183 | 206 | 24 | – | – | |
| TMHMM | 183 | 205 | 23 | – | – | |
| Phobius | 207 | 230 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v3386830.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3386830.4, powered by CORGI.
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