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Lj3g3v3440310.1

Overview

Field Value
Gene ID Lj3g3v3440310
Transcript ID Lj3g3v3440310.1
Lotus japonicus genome version MG20 v3.0
Description Farnesylated protein (ATFP6) [Medicago truncatula] gi|357473779|ref|XP_003607174.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22814:SF155
15 155 141 3.60E-100 –
PANTHER
PTHR22814
15 155 141 3.60E-100 –
Gene3D
G3DSA:3.30.70.100
26 94 69 1.10E-17 –
SUPERFAMILY
SSF55008
27 94 68 1.31E-14
IPR006121
CDD
cd00371
31 91 61 3.86E-13
IPR006121
Pfam
PF00403
32 87 56 2.50E-13
IPR006121
ProSiteProfiles
PS50846
36 92 57 9.499
IPR006121

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0030001
Biological process Metal ion transport The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj3g3v3440310.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3440310.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.