Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v3541740.1

Overview

Field Value
Gene ID Lj3g3v3541740
Transcript ID Lj3g3v3541740.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: chalcone synthase-like [Cicer arietinum] gi|502144397|ref|XP_004505681.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF000451
1 358 358 3.30E-107
IPR011141
PANTHER
PTHR11877:SF25
2 356 355 6.10E-223 –
CDD
cd00831
2 352 351 1.30E-128 –
PANTHER
PTHR11877
2 356 355 6.10E-223 –
Pfam
PF00195
2 196 195 1.10E-89
IPR001099
Gene3D
G3DSA:3.40.47.10
2 199 198 1.80E-68
IPR016039
SUPERFAMILY
SSF53901
2 196 195 1.92E-48
IPR016039
SUPERFAMILY
SSF53901
203 354 152 6.26E-35
IPR016039
Gene3D
G3DSA:3.40.47.10
204 354 151 3.60E-45
IPR016039
Pfam
PF02797
206 355 150 1.00E-58
IPR012328

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0016747
Molecular function Transferase activity, transferring acyl groups other than amino-acyl groups Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj3g3v3541740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3541740.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.