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Lj3g3v3627870.1

Overview

Field Value
Gene ID Lj3g3v3627870
Transcript ID Lj3g3v3627870.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ADP-ribosylation factor 1-like [Cicer arietinum] gi|502144197|ref|XP_004505613.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11711
1 188 188 3.50E-149 –
SMART
SM00177
1 181 181 5.60E-100 –
PANTHER
PTHR11711:SF168
1 188 188 3.50E-149 –
Pfam
PF00025
6 176 171 7.30E-69
IPR006689
SMART
SM00178
9 177 169 3.40E-17 –
ProSiteProfiles
PS51417
11 177 167 22.526
IPR024156
SUPERFAMILY
SSF52540
14 181 168 2.79E-55
IPR027417
TIGRFAM
TIGR00231
16 138 123 4.60E-21
IPR005225
Gene3D
G3DSA:3.40.50.300
17 182 166 7.60E-65
IPR027417
CDD
cd04150
18 176 159 3.01E-102 –
PRINTS
PR00328
19 42 24 3.40E-17
IPR006689
PRINTS
PR00328
47 71 25 3.40E-17
IPR006689
PRINTS
PR00328
74 99 26 3.40E-17
IPR006689
PRINTS
PR00328
119 140 22 3.40E-17
IPR006689

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj3g3v3627870.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3627870.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.