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Lj3g3v3639180.1

Overview

Field Value
Gene ID Lj3g3v3639180
Transcript ID Lj3g3v3639180.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Os02g0693200 [Oryza sativa Japonica Group] gi|115448041|ref|NP_001047800.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.287.110
12 101 90 1.50E-27
IPR001623
SUPERFAMILY
SSF46565
17 108 92 1.70E-27
IPR001623
PANTHER
PTHR24078
18 87 70 3.40E-26 –
SMART
SM00271
19 79 61 1.90E-25
IPR001623
Pfam
PF00226
20 84 65 1.50E-24
IPR001623
CDD
cd06257
20 76 57 3.48E-21
IPR001623
ProSiteProfiles
PS50076
20 87 68 20.236
IPR001623
PRINTS
PR00625
22 40 19 7.40E-19
IPR001623
PRINTS
PR00625
40 55 16 7.40E-19
IPR001623
PRINTS
PR00625
59 79 21 7.40E-19
IPR001623
ProSitePatterns
PS00636
64 83 20 –
IPR018253
PRINTS
PR00625
79 98 20 7.40E-19
IPR001623

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj3g3v3639180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3639180.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.