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Lj3g3v3753370.1

Overview

Field Value
Gene ID Lj3g3v3753370
Transcript ID Lj3g3v3753370.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: patellin-3-like [Fragaria vesca subsp]. vesca] gi|470127731|ref|XP_004299816.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23324
1 93 93 5.00E-242 –
MobiDBLite
mobidb-lite
1 170 170 – –
PANTHER
PTHR23324:SF48
1 93 93 5.00E-242 –
SUPERFAMILY
SSF46938
75 106 32 2.49E-16
IPR011074
Gene3D
G3DSA:3.40.525.10
80 107 28 2.50E-60
IPR001251
Coils
Coil
121 161 41 – –
PANTHER
PTHR23324
217 559 343 5.00E-242 –
PANTHER
PTHR23324:SF48
217 559 343 5.00E-242 –
Pfam
PF03765
218 257 40 1.40E-09
IPR011074
Gene3D
G3DSA:3.40.525.10
232 493 262 2.50E-60
IPR001251
SUPERFAMILY
SSF46938
232 274 43 2.49E-16
IPR011074
SMART
SM01100
233 258 26 1.30E-07
IPR011074
PRINTS
PR00180
236 258 23 6.90E-05
IPR001071
ProSiteProfiles
PS50191
272 449 178 18.252
IPR001251
SMART
SM00516
276 446 171 5.60E-32
IPR001251
CDD
cd00170
278 444 167 1.30E-38 –
Pfam
PF00650
280 443 164 6.30E-28
IPR001251
SUPERFAMILY
SSF52087
282 445 164 7.19E-35
IPR001251
PRINTS
PR00180
401 420 20 6.90E-05
IPR001071
ProSiteProfiles
PS50866
425 556 132 10.499
IPR009038
SUPERFAMILY
SSF101576
458 557 100 1.83E-07
IPR009038

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj3g3v3753370.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3753370.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.