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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009038
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 43 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.901s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0222439.2
n.a. PREDICTED: transmembrane emp24 domain-containing protein p24delta7-like [Cicer arietinum] gi|502091021|ref|XP_004489416.1| chr0 114444431 114449905 +
4 domain predictions
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Lj1g3v0112880.1
n.a. PREDICTED: transmembrane emp24 domain-containing protein p24beta3-like [Cicer arietinum] gi|502119581|ref|XP_004496668.1| chr1 1158120 1160828 +
5 domain predictions
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Lj1g3v0796410.1
n.a. PREDICTED: transmembrane emp24 domain-containing protein 10-like [Glycine max] gi|356515874|ref|XP_003526622.1| chr1 10529034 10531803 +
4 domain predictions
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Lj1g3v1381010.1
n.a. PREDICTED: patellin-5-like [Glycine max] gi|356507414|ref|XP_003522462.1| chr1 16753270 16756364 +
3 domain predictions
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Lj1g3v2391210.1
n.a. PREDICTED: patellin-6-like [Cicer arietinum] gi|502104343|ref|XP_004492509.1| chr1 28177135 28179722 +
3 domain predictions
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Lj1g3v4447080.1
n.a. PREDICTED: transmembrane emp24 domain-containing protein A-like [Glycine max] gi|356570600|ref|XP_003553473.1| chr1 52052446 52053674 +
2 domain predictions
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Lj2g3v1068630.1
n.a. PREDICTED: transmembrane emp24 domain-containing protein bai-like [Glycine max] gi|356572910|ref|XP_003554608.1| chr2 17152500 17155460 +
4 domain predictions
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Lj2g3v3339500.1
n.a. PREDICTED: transmembrane emp24 domain-containing protein-like [Glycine max] gi|356554509|ref|XP_003545588.1| chr2 42742999 42745864 +
4 domain predictions
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Lj3g3v0461680.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508711267|gb|EOY03164.1| chr3 4929507 4937947 +
3 domain predictions
 –
Lj3g3v3753340.1
n.a. PREDICTED: patellin-3-like [Cicer arietinum] gi|502146269|ref|XP_004506378.1| chr3 45475577 45484327 +
2 domain predictions
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Lj3g3v3753370.1
n.a. PREDICTED: patellin-3-like [Fragaria vesca subsp]. vesca] gi|470127731|ref|XP_004299816.1| chr3 45489656 45492670 -
3 domain predictions
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Lj4g3v0684120.1
n.a. PREDICTED: transmembrane emp24 domain-containing protein p24delta9-like isoform X1 [Cicer arietinum] gi|502180111|ref|XP_004516568.1| chr4 11352535 11355856 -
4 domain predictions
 –
Lj4g3v0684120.2
n.a. PREDICTED: transmembrane emp24 domain-containing protein p24delta9-like isoform X1 [Cicer arietinum] gi|502180111|ref|XP_004516568.1| chr4 11352952 11355856 -
4 domain predictions
 –
Lj4g3v2118280.1
n.a. PREDICTED: patellin-5-like [Glycine max] gi|356507414|ref|XP_003522462.1| chr4 28921349 28922155 -
3 domain predictions
 –
Lj4g3v2704640.1
n.a. PREDICTED: transmembrane emp24 domain-containing protein 10-like isoform 1 [Glycine max] gi|356512614|ref|XP_003525013.1| chr4 36392615 36395532 +
4 domain predictions
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Lj4g3v2858500.1
n.a. PREDICTED: patellin-5-like [Glycine max] gi|356527226|ref|XP_003532213.1| chr4 38223403 38226893 +
3 domain predictions
 –
Lj5g3v0710960.1
n.a. PREDICTED: patellin-3-like [Glycine max] gi|356516429|ref|XP_003526897.1| chr5 10514246 10515787 -
3 domain predictions
 –
Lj5g3v2045310.1
n.a. PREDICTED: transmembrane emp24 domain-containing protein p24beta3-like [Cicer arietinum] gi|502119581|ref|XP_004496668.1| chr5 29078134 29080412 -
5 domain predictions
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Lj6g3v2272060.1
n.a. Transmembrane emp24 domain-containing protein [Medicago truncatula] gi|357445539|ref|XP_003593047.1| chr6 26320288 26321973 -
4 domain predictions
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LotjaGi1g1v0005400.1
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT3G07680.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9S7M9|P24B2_ARATH Transmembrane emp24 domain-containing protein p24beta2; TrEMBL-Plants: tr|I3T587|I3T587_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0005400 LjG1.1_chr1 850891 863714 -
4 domain predictions
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LotjaGi1g1v0005400.2
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT3G07680.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9S7M9|P24B2_ARATH Transmembrane emp24 domain-containing protein p24beta2; TrEMBL-Plants: tr|I3T587|I3T587_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0005400 LjG1.1_chr1 861007 863453 -
4 domain predictions
 –
LotjaGi1g1v0258200.1
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT1G21900.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q8RWM6|P24D5_ARATH Transmembrane emp24 domain-containing protein p24delta5; TrEMBL-Plants: tr|V7AUX8|V7AUX8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0258200 LjG1.1_chr1 62581472 62584400 +
4 domain predictions
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LotjaGi1g1v0328300.1
n.a. Phosphatidylinositol transfer protein; TAIR: AT4G09160.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; Swiss-Prot: sp|Q9M0R2|PATL5_ARATH Patellin-5; TrEMBL-Plants: tr|A0A072V1D5|A0A072V1D5_MEDTR Patellin-3 protein; Found in the gene: LotjaGi1g1v0328300 LjG1.1_chr1 78321174 78325356 +
2 domain predictions
 –
LotjaGi1g1v0447900.1
n.a. Phosphatidylinositol transfer protein; TAIR: AT3G51670.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; Swiss-Prot: sp|Q9SCU1|PATL6_ARATH Patellin-6; TrEMBL-Plants: tr|A0A151RRX9|A0A151RRX9_CAJCA Patellin-6; Found in the gene: LotjaGi1g1v0447900 LjG1.1_chr1 94706658 94709499 +
2 domain predictions
 –
LotjaGi1g1v0506100.1
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT1G14010.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q8GYG1|P24D7_ARATH Transmembrane emp24 domain-containing protein p24delta7; TrEMBL-Plants: tr|A2Q3Q9|A2Q3Q9_MEDTR Emp24/gp25L/p24; Found in the gene: LotjaGi1g1v0506100 LjG1.1_chr1 102434211 102436968 +
4 domain predictions
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LotjaGi1g1v0715500.1
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT3G22845.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LIL4|P24B3_ARATH Transmembrane emp24 domain-containing protein p24beta3; TrEMBL-Plants: tr|A0A072U3W0|A0A072U3W0_MEDTR Emp24/gp25L/p24 family/GOLD protein; Found in the gene: LotjaGi1g1v0715500 LjG1.1_chr1 128378073 128380194 -
4 domain predictions
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LotjaGi2g1v0258700_LC.1
n.a. Pectinesterase; TAIR: AT3G29090.1 pectin methylesterase 31; Swiss-Prot: sp|Q9LVQ0|PME31_ARATH Pectinesterase 31; TrEMBL-Plants: tr|B9SVI9|B9SVI9_RICCO Pectinesterase; Found in the gene: LotjaGi2g1v0258700_LC LjG1.1_chr2 72569189 72575316 -
4 domain predictions
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LotjaGi2g1v0261300.1
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT1G26690.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9; TrEMBL-Plants: tr|I3RZZ7|I3RZZ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0261300 LjG1.1_chr2 73001956 73005187 +
4 domain predictions
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LotjaGi2g1v0300600.1
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT1G26690.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9; TrEMBL-Plants: tr|A0A0S3T1H5|A0A0S3T1H5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0300600 LjG1.1_chr2 77486410 77488191 -
4 domain predictions
 –
LotjaGi2g1v0300700.1
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT1G26690.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9; TrEMBL-Plants: tr|I1KMF6|I1KMF6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0300700 LjG1.1_chr2 77489352 77491598 -
4 domain predictions
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LotjaGi3g1v0053600.1
n.a. Retinal-binding; TAIR: AT5G01010.1 retinal-binding protein; Swiss-Prot: sp|P49193|RALB_TODPA Retinal-binding protein; TrEMBL-Plants: tr|I1MQR1|I1MQR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0053600 LjG1.1_chr3 5584295 5593301 +
2 domain predictions
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LotjaGi3g1v0201200.1
n.a. Phosphatidylinositol transfer protein; TAIR: AT3G51670.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; Swiss-Prot: sp|Q9SCU1|PATL6_ARATH Patellin-6; TrEMBL-Plants: tr|A0A151RRX9|A0A151RRX9_CAJCA Patellin-6; Found in the gene: LotjaGi3g1v0201200 LjG1.1_chr3 29337776 29341155 +
2 domain predictions
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LotjaGi3g1v0201200.2
n.a. Phosphatidylinositol transfer protein; TAIR: AT3G51670.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; Swiss-Prot: sp|Q9SCU1|PATL6_ARATH Patellin-6; TrEMBL-Plants: tr|A0A151RRX9|A0A151RRX9_CAJCA Patellin-6; Found in the gene: LotjaGi3g1v0201200 LjG1.1_chr3 29338252 29340359 +
2 domain predictions
 –
LotjaGi3g1v0556200.1
n.a. Phosphatidylinositol transfer protein; TAIR: AT4G09160.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; Swiss-Prot: sp|Q9M0R2|PATL5_ARATH Patellin-5; TrEMBL-Plants: tr|I1KWA0|I1KWA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556200 LjG1.1_chr3 97407047 97412321 -
2 domain predictions
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LotjaGi4g1v0089600.1
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT1G26690.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9; TrEMBL-Plants: tr|I3RZJ8|I3RZJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0089600 LjG1.1_chr4 11869050 11873000 -
4 domain predictions
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LotjaGi4g1v0388900.1
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT1G09580.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q6IDL4|P24D3_ARATH Transmembrane emp24 domain-containing protein p24delta3; TrEMBL-Plants: tr|I3SP02|I3SP02_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0388900 LjG1.1_chr4 76734011 76737195 +
4 domain predictions
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LotjaGi4g1v0416000.1
n.a. Phosphatidylinositol transfer protein; TAIR: AT1G72160.1 Sec14p-like phosphatidylinositol transfer family protein; Swiss-Prot: sp|Q56Z59|PATL3_ARATH Patellin-3; TrEMBL-Plants: tr|A0A1J7HZ98|A0A1J7HZ98_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0416000 LjG1.1_chr4 79150331 79154574 +
2 domain predictions
 –
LotjaGi5g1v0091300.1
n.a. Phosphatidylinositol transfer protein; TAIR: AT1G72160.1 Sec14p-like phosphatidylinositol transfer family protein; Swiss-Prot: sp|Q56Z59|PATL3_ARATH Patellin-3; TrEMBL-Plants: tr|A0A151S2I8|A0A151S2I8_CAJCA Patellin-3; Found in the gene: LotjaGi5g1v0091300 LjG1.1_chr5 15962658 15967004 -
2 domain predictions
 –
LotjaGi5g1v0309900.1
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT3G22845.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LIL4|P24B3_ARATH Transmembrane emp24 domain-containing protein p24beta3; TrEMBL-Plants: tr|I3S9R4|I3S9R4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0309900 LjG1.1_chr5 62804342 62819784 -
4 domain predictions
 –
LotjaGi5g1v0309900.6
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT3G22845.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LIL4|P24B3_ARATH Transmembrane emp24 domain-containing protein p24beta3; TrEMBL-Plants: tr|I3S9R4|I3S9R4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0309900 LjG1.1_chr5 62814539 62816767 -
4 domain predictions
 –
LotjaGi6g1v0142000.1
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT3G07680.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9S7M9|P24B2_ARATH Transmembrane emp24 domain-containing protein p24beta2; TrEMBL-Plants: tr|G7IV10|G7IV10_MEDTR Emp24/gp25L/p24 family/GOLD protein; Found in the gene: LotjaGi6g1v0142000 LjG1.1_chr6 40973961 40976738 +
4 domain predictions
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LotjaGi6g1v0266600.3
n.a. Phosphatidylinositol transfer protein; TAIR: AT1G30690.1 Sec14p-like phosphatidylinositol transfer family protein; Swiss-Prot: sp|Q94C59|PATL4_ARATH Patellin-4; TrEMBL-Plants: tr|A0A151SBB9|A0A151SBB9_CAJCA Patellin-4; Found in the gene: LotjaGi6g1v0266600 LjG1.1_chr6 58040497 58042315 +
2 domain predictions
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LotjaGi6g1v0359600.1
n.a. Transmembrane emp24 domain-containing protein; TAIR: AT1G57620.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9FVU0|P24D4_ARATH Transmembrane emp24 domain-containing protein p24delta4; TrEMBL-Plants: tr|I3S1Y6|I3S1Y6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0359600 LjG1.1_chr6 67115125 67117182 -
4 domain predictions
 –