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Lj4g3v0133570.1

Overview

Field Value
Gene ID Lj4g3v0133570
Transcript ID Lj4g3v0133570.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Glycine max] gi|356555700|ref|XP_003546168.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 63 63 – –
PANTHER
PTHR23333
12 306 295 6.50E-162 –
PANTHER
PTHR23333:SF26
12 306 295 6.50E-162 –
MobiDBLite
mobidb-lite
78 99 22 – –
SUPERFAMILY
SSF102848
106 201 96 9.94E-32
IPR012989
SMART
SM00553
111 204 94 2.00E-45
IPR012989
ProSiteProfiles
PS51399
114 178 65 34.038
IPR012989
Pfam
PF08059
119 192 74 5.90E-28
IPR012989
MobiDBLite
mobidb-lite
173 227 55 – –
Gene3D
G3DSA:3.10.20.90
179 305 127 5.60E-34 –
SUPERFAMILY
SSF54236
187 304 118 3.10E-24
IPR029071
SMART
SM00166
227 306 80 0.0045
IPR001012
ProSiteProfiles
PS50033
228 305 78 18.06
IPR001012
Pfam
PF00789
232 305 74 5.40E-16
IPR001012

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj4g3v0133570.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0133570.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.