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Lj4g3v0335800.1

Overview

Field Value
Gene ID Lj4g3v0335800
Transcript ID Lj4g3v0335800.1
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: SEC1 family transport protein SLY1-like [Glycine max] gi|356512111|ref|XP_003524764.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF56815
1 608 608 4.84E-147
IPR001619
PANTHER
PTHR11679
2 611 610 1.30E-291
IPR001619
Gene3D
G3DSA:3.40.50.2060
2 138 137 2.70E-38 –
PANTHER
PTHR11679:SF2
2 611 610 1.30E-291 –
PIRSF
PIRSF005715
4 613 610 4.50E-57
IPR001619
Pfam
PF00995
35 601 567 6.30E-113
IPR001619
Gene3D
G3DSA:3.40.50.1910
144 257 114 1.80E-65
IPR027482
Gene3D
G3DSA:3.90.830.10
259 392 134 1.30E-45 –
Coils
Coil
309 329 21 – –
Gene3D
G3DSA:1.25.40.60
393 493 101 2.20E-24 –
Gene3D
G3DSA:3.40.50.1910
510 610 101 1.80E-65
IPR027482
MobiDBLite
mobidb-lite
522 548 27 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006904
Biological process Vesicle docking involved in exocytosis The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis.
Subterm of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj4g3v0335800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0335800.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.