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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0336250 |
| Transcript ID | Lj4g3v0336250.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Auxin-induced protein 5NG4 [Medicago truncatula] gi|357445673|ref|XP_003593114.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 389 | 389 | 5.10E-200 | ||
| PANTHER | 1 | 389 | 389 | 5.10E-200 | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 1 | 25 | 25 | – | – | |
| TMHMM | 3 | 25 | 23 | – | – | |
| Phobius | 4 | 16 | 13 | – | – | |
| Pfam | 12 | 140 | 129 | 2.80E-13 | ||
| Phobius | 17 | 25 | 9 | – | – | |
| Phobius | 26 | 40 | 15 | – | – | |
| TMHMM | 40 | 62 | 23 | – | – | |
| Phobius | 41 | 63 | 23 | – | – | |
| SUPERFAMILY | 47 | 156 | 110 | 2.62E-07 | – | |
| Phobius | 64 | 74 | 11 | – | – | |
| TMHMM | 75 | 94 | 20 | – | – | |
| Phobius | 75 | 94 | 20 | – | – | |
| Phobius | 95 | 99 | 5 | – | – | |
| Phobius | 100 | 126 | 27 | – | – | |
| TMHMM | 104 | 126 | 23 | – | – | |
| Phobius | 127 | 137 | 11 | – | – | |
| TMHMM | 138 | 156 | 19 | – | – | |
| Phobius | 138 | 156 | 19 | – | – | |
| Phobius | 157 | 190 | 34 | – | – | |
| TMHMM | 190 | 209 | 20 | – | – | |
| Pfam | 191 | 329 | 139 | 7.90E-14 | ||
| Phobius | 191 | 209 | 19 | – | – | |
| Phobius | 210 | 220 | 11 | – | – | |
| Phobius | 221 | 242 | 22 | – | – | |
| TMHMM | 221 | 242 | 22 | – | – | |
| SUPERFAMILY | 230 | 334 | 105 | 4.18E-11 | – | |
| Phobius | 243 | 261 | 19 | – | – | |
| TMHMM | 257 | 279 | 23 | – | – | |
| Phobius | 262 | 279 | 18 | – | – | |
| Phobius | 280 | 285 | 6 | – | – | |
| Phobius | 286 | 305 | 20 | – | – | |
| TMHMM | 286 | 305 | 20 | – | – | |
| Phobius | 306 | 310 | 5 | – | – | |
| TMHMM | 310 | 330 | 21 | – | – | |
| Phobius | 311 | 330 | 20 | – | – | |
| Phobius | 331 | 436 | 106 | – | – | |
| MobiDBLite | 369 | 436 | 68 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of Lj4g3v0336250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0336250.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.